Analysis of Microcystis

From single cells to colonies

The wide particle size range measured in the CytoSense enabled researchers to analyze Microcystis single cells and colonies present in Lake Taihu. Since September 2016 a CytoSense is applied to continuously monitor dynamics of this harmful cyanobacterium. It is a part of a large-scale program set up to protect water quality in Lake Taihu, drinking water source to over 30 million people. The CytoSense project is realized by the Taihu Basin Authority in partnership with the Dutch Ministry of Infrastructure and the Environment.

Help Shape a High- Frequency Plankton Observation Guide

To support harmonisation across the community, Dr. Veronique Creach (Cefas) is developing a Terms of Reference (TOR) within the ICES Working Group on Phytoplankton and Microbial Ecology (WGPME): “Create a guide for determining consistent plankton observations at high frequency.”

High-frequency flow cytometry and imaging are increasingly used to characterise phytoplankton diversity, including community cell-size structure. This approach aligns with the GOOS-edited (2025) Essential Ocean Variable Specification Sheet and supports higher-order products such as Phytoplankton Functional Types. As autonomous, high-sampling deployments expand, shared best practices for
collection, measurement, and analysis are essential.

To support harmonisation across the community, we are developing a Terms of Reference (TOR) within the ICES Working Group on Phytoplankton and Microbial Ecology (WGPME): “Create a guide for determining consistent plankton observations at high frequency.”

Who we’re looking for: CytoBuoy users (any platform or configuration).
What to share: sampling workflows, calibration/QA approaches, processing pipelines, metadata practices, and lessons learned from autonomous/high-frequency deployments.
Why participate: help establish consistent methods and improve
comparability across datasets and regions.

If you use a CytoBuoy instrument and would like to contribute, please contact Dr Veronique Creach (veronique.creach@cefas.gov.uk) or Nicole Poulton (npoulton@bigelow.org). A brief note describing your instrument configuration and use case is enough to get started.